A wrapper-based feature selection method for ADMET prediction using evolutionary computing

Axel J. Soto, Rocío L. Cecchini, Gustavo E. Vazquez, Ignacio Ponzoni

Producción científica: Capítulo del libro/informe/acta de congresoContribución a la conferenciarevisión exhaustiva

15 Citas (Scopus)

Resumen

Wrapper methods look for the selection of a subset of features or variables in a data set, in such a way that these features are the most relevant for predicting a target value. In chemoinformatics context, the determination of the most significant set of descriptors is of great importance due to their contribution for improving ADMET prediction models. In this paper, a comprehensive analysis of descriptor selection aimed to physicochemical property prediction is presented. In addition, we propose an evolutionary approach where different fitness functions are compared. The comparison consists in establishing which method selects the subset of descriptors that best predicts a given property, as well as maintaining the cardinality of the subset to a minimum. The performance of the proposal was assessed for predicting hydrophobicity, using an ensemble of neural networks for the prediction task. The results showed that the evolutionary approach using a non linear fitness function constitutes a novel and a promising technique for this bioinformatic application.

Idioma originalInglés
Título de la publicación alojadaEvolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 6th European Conference, EvoBIO 2008, Proceedings
Páginas188-199
Número de páginas12
DOI
EstadoPublicada - 2008
Publicado de forma externa
Evento6th European Conference on Evolutionary Computation, Machine Learning, and Data Mining in Bioinformatics, EvoBIO 2008 - Naples
Duración: 26 mar. 200828 mar. 2008

Serie de la publicación

NombreLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volumen4973 LNCS
ISSN (versión impresa)0302-9743
ISSN (versión digital)1611-3349

Conferencia

Conferencia6th European Conference on Evolutionary Computation, Machine Learning, and Data Mining in Bioinformatics, EvoBIO 2008
País/TerritorioItaly
CiudadNaples
Período26/03/0828/03/08

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